home/barefootbushman/miniconda3/bin/x86_64-conda_cos6-linux-gnu-c++ -I"/usr/share/R/include" -DNDEBUG -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. * installing *source* package ‘BayesLogit’. Installing package into ‘/home/barefootbushman/R/x86_64-pc-linux-gnu-library/3.6’ ─ looking to see if a ‘data/datalist’ file should be added ─ checking for empty or unneeded directories ─ checking for LF line-endings in source and make files and shell scripts ✔ checking for file ‘/tmp/RtmpFgmgVU/remotes10aa2c0130d5/BayesLogit/DESCRIPTION’. The first is installing BayesLogit - an R package. home/linuxbrew/.linuxbrew/bin:/etc/:/usr/:/usr/lib/x86_64-linux-gnu/pkgconfig/:/home/linuxbrew/.linuxbrew/bin:/usr/lib/x86_64-linux-gnu/pkgconfig:/usr/lib/x86_64-linux-gnu:/usr/lib/:/home/linuxbrew/.linuxbrew/bin:/usr/include/:/usr/:/usr/bin:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/bin:/home/barefootbushman/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
"/home/barefootbushman/R/x86_64-pc-linux-gnu-library/3.6" "/usr/local/lib/R/site-library" "/usr/lib/R/site-library"Īnd echo $PATH in the terminal returns: Thresholds/HMSIC Example$ echo $PATH
libPaths() are configured to the following: >. Loaded via a namespace (and not attached): stats graphics grDevices utils datasets methods base LC_PAPER=en_NZ.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8 LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8 > sessionInfo()īLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 I nearly always have the packages installed, so running sudo apt-get won't fix the problem. However, when I try installing R packages, I am always getting errors as R is always looking in the wrong directories.
I am using R in RStudio outside of a conda environment (I have miniconda3 installed to operate QIIME2).
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